Quit your games first
What happened
Repairing the engine replaces files that running games and stores use, so Malbec doesn’t do it while Battle.net, Steam or a game is open.
The fix
Click Quit Stores and Games…; Malbec asks before it quits anything. Then choose Repair Engine again.
When to write to us
If a store won’t quit, see The store is still running. Write to us if that doesn’t help.
Email support@malbec.app. For a diagnostics file, choose Help › Export Diagnostics… in Malbec and attach the zip it saves. It has no account details, and your home folder is masked.